Atomistic Mechanism Underlying the Regulation of the GPA1 G Protein Signaling Pathway Mediated by the Gibberellin A1 Phytohormone Binding to the GCR1 Plant G-Protein-Coupled Receptor
Pedro M. Hernández, Carlos A. Arango, Soo-Kyung Kim, Andrés Jaramillo-Botero, William A. Goddard III
#1710·2025·Journal of Chemical Information and Modeling
Metabotropic GABAB Receptor Activation Induced by G Protein Coupling
Moon Young Yang, Soo-Kyung Kim, William A. Goddard III
#1674·2025·J. Am. Chem. Soc.·3cited
2024
6 papers
Agonist activation to open the Gα subunit of the GPCR–G protein precoupled complex defines functional agonist activation of TAS2R5
Moon Young Yang, Khuong Duy Mac, Hannah R. Strzelinski, Samantha A. Hoffman, Donghwa Kim, et al.
#1657·2024·Proc. Natl. Acad. Sci. U.S.A.·6cited
Steviol rebaudiosides bind to four different sites of the human sweet taste receptor (T1R2/T1R3) complex explaining confusing experiments.
S. Hao, Brian Guthrie, Soo-Kyung Kim, S. Balanda, J. Kubicek, et al.
#1653·2024·Commun. Chem.·18cited
Experimental Validation of the Neurotrophic Factor-α1 Binding Site on the Serotonin Receptor 1E (HTR1E) Responsible for β-Arrestin Activation and Subsequent Neuroprotection
Xuyu Yang, Joo-Youn Lee, Soo-Kyung Kim, Y. Peng Loh, William A. Goddard III
#1648·2024·ACS Omega·1cited
The G Protein-First Mechanism for Activation of the Class B Glucagon-like Peptide 1 Receptor Coupled to N-Terminal Domain-Mediated Conformational Progression
Bo Li, Moon Young Yang, Soo-Kyung Kim, William A. Goddard III
#1647·2024·J. Am. Chem. Soc.·3cited
Ligand-Dependent and G Protein-Dependent Properties for the Sweet Taste Heterodimer, TAS1R2/1R3
Soo-Kyung Kim, Brian Guthrie, William A. Goddard III
#1646·2024·J. Phys. Chem. B·1cited
Methotrexate Inhibits the Binding of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Receptor Binding Domain to the Host-Cell Angiotensin-Converting Enzyme-2 (ACE-2) Receptor
Soo-Kyung Kim, Sartanee Suebka, Adley Gin, Phuong-Diem Nguyen, Yisha Tang, et al.
Fully activated structure of the sterol-bound Smoothened GPCR-Gi protein complex
Amy-Doan P. Vo, Soo-Kyung Kim, Moon Young Yang, Alison E. Ondrus, William A. Goddard III
#1603·2023·Proc. Natl. Acad. Sci. U.S.A.·7cited
Discovery of 3-Phenyl Indazole-Based Novel Chemokine-like Receptor 1 Antagonists for the Treatment of Psoriasis
Bongki Ko, Yongsoo Jang, Seung-hwa Kwak, Hyun You, Jeong-hyun Kim, et al.
#1599·2023·Journal of Medicinal Chemistry·2cited
Genipin and pyrogallol: Two natural small molecules targeting the modulation of disordered proteins in Alzheimer's disease
Sujin Kim, Da Gyeong Hyun, Yunkwon Nam, Soo Jung Shin, Dongjoon Im, et al.
#1600·2023·Biomedicine & Pharmacotherapy·10cited
Structure and Molecular Mechanism of Signaling for the Glucagon-like Peptide-1 Receptor Bound to Gs Protein and Exendin-P5 Biased Agonist
Bo Li, Krystyna Maruszko, Soo-Kyung Kim, Moon Young Yang, Amy-Doan P. Vo, et al.
#1589·2023·J. Am. Chem. Soc.·10cited
The dynamics of agonist-β₂-adrenergic receptor activation induced by binding of GDP-bound Gs protein
Amirhossein Mafi, Soo-Kyung Kim, William A. Goddard III
#1584·2023·Nature Chemistry·27cited
Stereochemical engineering yields a multifunctional peptide macrocycle inhibitor of Akt2 by fine-tuning macrocycle-cell membrane interactions
Arundhati Nag, Amirhossein Mafi, Samir Das, Mary Beth Yu, Belen Alvarez-Villalonga, et al.
#1576·2023·Commun. Chem.·2cited
Predicted structure and cell signaling of TAS2R14 reveal receptor hyper-flexibility for detecting diverse bitter tastes
Alina Tokmakova, Donghwa Kim, Brian Guthrie, Soo-Kyung Kim, William A. Goddard III, et al.
#1564·2023·iScience·25cited
Discovery and Binding Mechanism of Pyrazoloisoquinoline-Based Novel β-Arrestin Inverse Agonists of the Kappa-Opioid Receptor
Jae-Hoon Jung, In Hee Jang, Moon Young Yang, Sunhong Kim, Soo-Kyung Kim, et al.
#1562·2023·Journal of Medicinal Chemistry·1cited
Predicted Three-Dimensional Structure of the GCR1 Putative GPCR in Arabidopsis thaliana and Its Binding to Abscisic Acid and Gibberellin A1
Pedro M. Hernández, Carlos A. Arango, Soo-Kyung Kim, Andrés Jaramillo-Botero, William A. Goddard III
#1572·2023·Journal of Agricultural and Food Chemistry·6cited
Intermediate-state-trapped mutants pinpoint G protein-coupled receptor conformational allostery
Xudong Wang, Chris Neale, Soo-Kyung Kim, William A. Goddard III, Libin Ye
#1558·2023·Nature Communications·18cited
2022
4 papers
Characterization of the Solid Electrolyte Interphase at the Li Metal–Ionic Liquid Interface
Moon Young Yang, Sergey V. Zybin, Tridip Das, Boris V. Merinov, William A. Goddard III, et al.
#1553·2022·Advanced Energy Materials·38cited
G protein coupling and activation of the metabotropic GABA₈ heterodimer
Moon Young Yang, Soo-Kyung Kim, William A. Goddard III
#1526·2022·Nature Communications·22cited
The mechanism for ligand activation of the GPCR–G protein complex
Amirhossein Mafi, Soo-Kyung Kim, William A. Goddard III
#1518·2022·Proc. Natl. Acad. Sci. U.S.A.·92cited
Complete inhibition of a polyol nucleation by a micromolar biopolymer additive
Xin Wen, Sen Wang, Robert Ramji, Luke O. Butler, Yelena Bagdagulyan, et al.
#1532·2022·Cell Rep. Phys. Sci.·3cited
2021
10 papers
Novel interaction between neurotrophic factor-α1/carboxypeptidase E and serotonin receptor, 5-HTR1E, protects human neurons against oxidative/neuroexcitotoxic stress via β-arrestin/ERK signaling
Vinay Kumar Sharma, Xuyu Yang, Soo-Kyung Kim, Amirhossein Mafi, Daniel Saiz-Sanchez, et al.
#1503·2021·Cellular and Molecular Life Sciences·29cited
Synergic Effects in the Activation of the Sweet Receptor GPCR Heterodimer for Various Sweeteners Predicted Using Molecular Metadynamics Simulations
Jaewan Jang, Soo-Kyung Kim, Brian Guthrie, William A. Goddard III
#1492·2021·Journal of Agricultural and Food Chemistry·22cited
Predicted Structure of Fully Activated Tas1R3/1R3′ Homodimer Bound to G Protein and Natural Sugars: Structural Insights into G Protein Activation by a Class C Sweet Taste Homodimer with Natural Sugars
Amirhossein Mafi, Soo-Kyung Kim, Keng C. Chou, Brian Guthrie, William A. Goddard III
#1491·2021·J. Am. Chem. Soc.·17cited
Structures and Agonist Binding Sites of Bitter Taste Receptor TAS2R5 Complexed with Gi Protein and Validated against Experiment
Moon Young Yang, Soo-Kyung Kim, Donghwa Kim, Stephen B. Liggett, William A. Goddard III
#1489·2021·J. Phys. Chem. Lett.·19cited
The G protein-first activation mechanism of opioid receptors by Gi protein and agonists
Amirhossein Mafi, Soo-Kyung Kim, William A. Goddard III
#1480·2021·QRB Discovery·18cited
Transport properties of imidazolium based ionic liquid electrolytes from molecular dynamics simulations
Moon Young Yang, Boris V. Merinov, Sergey V. Zybin, William A. Goddard III, Eun Kyung Mok, et al.
Autobifunctional Mechanism of Jagged Pt Nanowires for Hydrogen Evolution Kinetics via End-to-End Simulation
Geun Ho Gu, Juhyung Lim, Chengzhang Wan, Tao Cheng, Heting Pu, et al.
#1421·2021·J. Am. Chem. Soc.·44cited
Predicted structure of fully activated human bitter taste receptor TAS2R4 complexed with G protein and agonists
Moon Young Yang, Amirhossein Mafi, Soo-Kyung Kim, William A. Goddard III, Brian Guthrie
#1465·2021·QRB Discovery·17cited
Hedgehog proteins create a dynamic cholesterol interface
Amirhossein Mafi, Rahul Purohit, Erika Vielmas, Alexa R. Lauinger, Brandon Lam, et al.
#1415·2021·PLoS ONE·12cited
Structural Variation and Odorant Binding for Olfactory Receptors Selected from the Six Major Subclasses of the OR Phylogenetic Tree
M. Malinska, Soo-Kyung Kim, William A. Goddard III, M. Ashok
#1435·2021·In: Computational Materials, Chemistry, and Biochemistry: From Bold Initiatives to the Last Mile ; Springer Series in Materials Science, No. 284; (S. Shankar, R. Muller, T. Dunning and G.H. Chen), Springer, Cham, 2021, pp.855–925.·2cited